J5_8B2L_001
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGG*CGAUGAAG*UGAACG*CG*CAC
- Length
- 22 nucleotides
- Bulged bases
- 8B2L|1|B3|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B2L_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.061
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|G|18
8B2L|1|A3|G|19
8B2L|1|A3|G|20
*
8B2L|1|B3|C|38
8B2L|1|B3|G|39
8B2L|1|B3|A|40
8B2L|1|B3|U|41
8B2L|1|B3|G|42
8B2L|1|B3|A|43
8B2L|1|B3|A|44
8B2L|1|B3|G|45
*
8B2L|1|B3|U|105
8B2L|1|B3|G|106
8B2L|1|B3|A|107
8B2L|1|B3|A|108
8B2L|1|B3|C|109
8B2L|1|B3|G|110
*
8B2L|1|B3|C|118
8B2L|1|B3|G|119
*
8B2L|1|B3|C|142
8B2L|1|B3|A|143
8B2L|1|B3|C|144
Current chains
- Chain A3
- 25S rRNA
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain F3
- Ribosomal protein L15
- Chain V3
- Ribosomal protein L37
- Chain k3
- 60S ribosomal protein L23a
- Chain n3
- 60S ribosomal protein L35-like
Coloring options: