J5_8B2L_002
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 8B2L|1|A3|U|1447
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B2L_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0507
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.2
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8B2L|1|A3|G|669
8B2L|1|A3|G|670
8B2L|1|A3|A|671
8B2L|1|A3|G|672
8B2L|1|A3|U|673
8B2L|1|A3|OMC|674
*
8B2L|1|A3|G|809
8B2L|1|A3|G|810
8B2L|1|A3|A|811
8B2L|1|A3|C|812
*
8B2L|1|A3|G|951
8B2L|1|A3|U|952
8B2L|1|A3|U|953
8B2L|1|A3|C|954
*
8B2L|1|A3|G|1387
8B2L|1|A3|C|1388
*
8B2L|1|A3|G|1442
8B2L|1|A3|C|1443
8B2L|1|A3|A|1444
8B2L|1|A3|G|1445
8B2L|1|A3|A|1446
8B2L|1|A3|U|1447
8B2L|1|A3|OMC|1448
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain N3
- eL28 (60S ribosomal protein L28)
- Chain R3
- 60S ribosomal protein L32-1
- Chain f3
- uL15 (60S ribosomal protein L27a)
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: