J5_8B2L_003
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAG*CG(PSU)AA*UGAUUG*CGA*UGUGAG
- Length
- 24 nucleotides
- Bulged bases
- 8B2L|1|A3|U|794, 8B2L|1|A3|G|795
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|C|686
8B2L|1|A3|G|687
8B2L|1|A3|A|688
8B2L|1|A3|G|689
*
8B2L|1|A3|C|715
8B2L|1|A3|G|716
8B2L|1|A3|PSU|717
8B2L|1|A3|A|718
8B2L|1|A3|A|719
*
8B2L|1|A3|U|726
8B2L|1|A3|G|727
8B2L|1|A3|A|728
8B2L|1|A3|U|729
8B2L|1|A3|U|730
8B2L|1|A3|G|731
*
8B2L|1|A3|C|759
8B2L|1|A3|G|760
8B2L|1|A3|A|761
*
8B2L|1|A3|U|792
8B2L|1|A3|G|793
8B2L|1|A3|U|794
8B2L|1|A3|G|795
8B2L|1|A3|A|796
8B2L|1|A3|G|797
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain O3
- 60S ribosomal protein L29
- Chain U3
- eL36 (60S ribosomal protein L36)
- Chain f3
- uL15 (60S ribosomal protein L27a)
- Chain s3
- uL4 (60S ribosomal protein L4)
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