J5_8B2L_005
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8B2L|1|A3|A|2407, 8B2L|1|A3|A|2820, 8B2L|1|A3|U|2821, 8B2L|1|A3|G|2877, 8B2L|1|A3|U|2981, 8B2L|1|A3|U|2982
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B2L|1|A3|A|2402
8B2L|1|A3|G|2403
8B2L|1|A3|A|2404
8B2L|1|A3|A|2405
8B2L|1|A3|G|2406
8B2L|1|A3|A|2407
8B2L|1|A3|C|2408
8B2L|1|A3|C|2409
*
8B2L|1|A3|OMG|2818
8B2L|1|A3|G|2819
8B2L|1|A3|A|2820
8B2L|1|A3|U|2821
8B2L|1|A3|A|2822
8B2L|1|A3|A|2823
8B2L|1|A3|C|2824
8B2L|1|A3|U|2825
8B2L|1|A3|G|2826
*
8B2L|1|A3|C|2870
8B2L|1|A3|U|2871
8B2L|1|A3|U|2872
8B2L|1|A3|5MC|2873
8B2L|1|A3|G|2874
8B2L|1|A3|A|2875
8B2L|1|A3|U|2876
8B2L|1|A3|G|2877
8B2L|1|A3|U|2878
8B2L|1|A3|C|2879
*
8B2L|1|A3|G|2954
8B2L|1|A3|G|2955
8B2L|1|A3|UR3|2956
8B2L|1|A3|U|2957
8B2L|1|A3|PSU|2958
8B2L|1|A3|A|2959
8B2L|1|A3|G|2960
*
8B2L|1|A3|PSU|2978
8B2L|1|A3|A|2979
8B2L|1|A3|G|2980
8B2L|1|A3|U|2981
8B2L|1|A3|U|2982
8B2L|1|A3|U|2983
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain O3
- 60S ribosomal protein L29
- Chain f3
- uL15 (60S ribosomal protein L27a)
- Chain i2
- Transfer RNA; tRNA
- Chain l3
- nascent chain
- Chain o3
- uL2 (60S ribosomal protein L8)
- Chain r3
- uL3 (60S ribosomal protein L3)
- Chain s3
- uL4 (60S ribosomal protein L4)
Coloring options: