J5_8B2L_011

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUAUCUACUACU(OMC)*GUGCAACAAACC*GAUG*CGGAU*ACGC

Length

39 nucleotides

Bulged bases

8B2L|1|h1|U|129, 8B2L|1|h1|U|133, 8B2L|1|h1|A|134, 8B2L|1|h1|C|135, 8B2L|1|h1|C|138, 8B2L|1|h1|U|139

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B2L|1|h1|G|127
8B2L|1|h1|G|128
8B2L|1|h1|U|129
8B2L|1|h1|A|130
8B2L|1|h1|U|131
8B2L|1|h1|C|132
8B2L|1|h1|U|133
8B2L|1|h1|A|134
8B2L|1|h1|C|135
8B2L|1|h1|U|136
8B2L|1|h1|A|137
8B2L|1|h1|C|138
8B2L|1|h1|U|139
8B2L|1|h1|OMC|140
*
8B2L|1|h1|G|171
8B2L|1|h1|U|172
8B2L|1|h1|G|173
8B2L|1|h1|C|174
8B2L|1|h1|A|175
8B2L|1|h1|A|176
8B2L|1|h1|C|177
8B2L|1|h1|A|178
8B2L|1|h1|A|179
8B2L|1|h1|A|180
8B2L|1|h1|C|181
8B2L|1|h1|C|182
*
8B2L|1|h1|G|198
8B2L|1|h1|A|199
8B2L|1|h1|U|200
8B2L|1|h1|G|201
*
8B2L|1|h1|C|266
8B2L|1|h1|G|267
8B2L|1|h1|G|268
8B2L|1|h1|A|269
8B2L|1|h1|U|270
*
8B2L|1|h1|A|292
8B2L|1|h1|C|293
8B2L|1|h1|G|294
8B2L|1|h1|C|295

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain P1

40S ribosomal protein S8

Chain k1

40S ribosomal protein S6