J5_8B5L_003
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8B5L|1|5|G|3352, 8B5L|1|5|G|3357
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B5L_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1151
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|G|2698
8B5L|1|5|C|2699
8B5L|1|5|A|2700
8B5L|1|5|A|2701
8B5L|1|5|G|2702
8B5L|1|5|C|2703
8B5L|1|5|OMC|2704
8B5L|1|5|G|2705
8B5L|1|5|G|2706
*
8B5L|1|5|U|2730
8B5L|1|5|G|2731
*
8B5L|1|5|U|3345
8B5L|1|5|G|3346
*
8B5L|1|5|C|3350
8B5L|1|5|G|3351
8B5L|1|5|G|3352
8B5L|1|5|A|3353
8B5L|1|5|C|3354
8B5L|1|5|C|3355
8B5L|1|5|A|3356
8B5L|1|5|G|3357
8B5L|1|5|G|3358
*
8B5L|1|5|C|3567
8B5L|1|5|A|3568
8B5L|1|5|C|3569
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain R
- Ribosomal protein L19
- Chain V
- 60S ribosomal protein L23
- Chain W
- Ribosomal protein L24
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