Loop J5_8B5L

3D structure

PDB id: 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUU(5MC)GA(PSU)GUC*GG(UR3)(PSU)UAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 8B5L|1|5|A|3640, 8B5L|1|5|A|4140, 8B5L|1|5|G|4197, 8B5L|1|5|U|4198, 8B5L|1|5|U|4301, 8B5L|1|5|U|4302
QA status: Modified nucleotides: 5MC, PSU, UR3

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8B5L|1|5|A|3635
8B5L|1|5|G|3636
8B5L|1|5|A|3637
8B5L|1|5|A|3638
8B5L|1|5|G|3639
8B5L|1|5|A|3640
8B5L|1|5|C|3641
8B5L|1|5|C|3642
*
8B5L|1|5|G|4138
8B5L|1|5|G|4139
8B5L|1|5|A|4140
8B5L|1|5|U|4141
8B5L|1|5|A|4142
8B5L|1|5|A|4143
8B5L|1|5|C|4144
8B5L|1|5|U|4145
8B5L|1|5|G|4146
*
8B5L|1|5|C|4190
8B5L|1|5|U|4191
8B5L|1|5|U|4192
8B5L|1|5|5MC|4193
8B5L|1|5|G|4194
8B5L|1|5|A|4195
8B5L|1|5|PSU|4196
8B5L|1|5|G|4197
8B5L|1|5|U|4198
8B5L|1|5|C|4199
*
8B5L|1|5|G|4274
8B5L|1|5|G|4275
8B5L|1|5|UR3|4276
8B5L|1|5|PSU|4277
8B5L|1|5|U|4278
8B5L|1|5|A|4279
8B5L|1|5|G|4280
*
8B5L|1|5|U|4298
8B5L|1|5|A|4299
8B5L|1|5|G|4300
8B5L|1|5|U|4301
8B5L|1|5|U|4302
8B5L|1|5|U|4303

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain A: Ribosomal protein L8
Chain B: Ribosomal protein L3
Chain C: 60S ribosomal protein L4
Chain a: 60S ribosomal protein L27a
Chain b: 60S ribosomal protein L29

J5_8B5L_004