3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8BF7|1|0|U|1758, 8BF7|1|0|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BF7_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.1429
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8BF7|1|0|G|1674
8BF7|1|0|C|1675
8BF7|1|0|A|1676
8BF7|1|0|A|1677
8BF7|1|0|A|1678
8BF7|1|0|A|1679
8BF7|1|0|U|1680
8BF7|1|0|G|1681
8BF7|1|0|G|1682
*
8BF7|1|0|C|1706
8BF7|1|0|G|1707
*
8BF7|1|0|U|1751
8BF7|1|0|C|1752
*
8BF7|1|0|G|1756
8BF7|1|0|A|1757
8BF7|1|0|U|1758
8BF7|1|0|A|1759
8BF7|1|0|C|1760
8BF7|1|0|C|1761
8BF7|1|0|A|1762
8BF7|1|0|G|1763
8BF7|1|0|C|1764
*
8BF7|1|0|G|1988
8BF7|1|0|G|1989
8BF7|1|0|C|1990

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L3
Chain H
50S ribosomal protein L14
Chain M
50S ribosomal protein L19

Coloring options:


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