J5_8BF7_006
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8BF7|1|0|U|2076, 8BF7|1|0|G|2428, 8BF7|1|0|G|2429, 8BF7|1|0|A|2430, 8BF7|1|0|U|2431, 8BF7|1|0|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BF7_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1575
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BF7|1|0|U|2074
8BF7|1|0|U|2075
8BF7|1|0|U|2076
8BF7|1|0|A|2077
*
8BF7|1|0|U|2243
8BF7|1|0|U|2244
8BF7|1|0|U|2245
8BF7|1|0|G|2246
*
8BF7|1|0|C|2258
8BF7|1|0|U|2259
*
8BF7|1|0|A|2281
8BF7|1|0|G|2282
*
8BF7|1|0|C|2427
8BF7|1|0|G|2428
8BF7|1|0|G|2429
8BF7|1|0|A|2430
8BF7|1|0|U|2431
8BF7|1|0|A|2432
8BF7|1|0|A|2433
8BF7|1|0|A|2434
8BF7|1|0|A|2435
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
- Chain b
- 50S ribosomal protein L33
- Chain d
- 50S ribosomal protein L35
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