J5_8BF7_009
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8BF7|1|2|A|60, 8BF7|1|2|A|109, 8BF7|1|2|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BF7_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.149
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BF7|1|2|C|58
8BF7|1|2|A|59
8BF7|1|2|A|60
8BF7|1|2|G|61
*
8BF7|1|2|C|106
8BF7|1|2|G|107
8BF7|1|2|G|108
8BF7|1|2|A|109
8BF7|1|2|C|110
8BF7|1|2|G|111
8BF7|1|2|G|112
8BF7|1|2|G|113
*
8BF7|1|2|C|314
8BF7|1|2|A|315
8BF7|1|2|C|316
*
8BF7|1|2|G|337
8BF7|1|2|A|338
8BF7|1|2|C|339
*
8BF7|1|2|G|350
8BF7|1|2|G|351
8BF7|1|2|C|352
8BF7|1|2|A|353
8BF7|1|2|G|354
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain H
- 50S ribosomal protein L14
- Chain M
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S16
- Chain x
- 30S ribosomal protein S20
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