J5_8BGE_009

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8BGE|1|2|A|109, 8BGE|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BGE_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1346

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BGE|1|2|C|58
8BGE|1|2|A|59
8BGE|1|2|A|60
8BGE|1|2|G|61
*
8BGE|1|2|C|106
8BGE|1|2|G|107
8BGE|1|2|G|108
8BGE|1|2|A|109
8BGE|1|2|C|110
8BGE|1|2|G|111
8BGE|1|2|G|112
8BGE|1|2|G|113
*
8BGE|1|2|C|314
8BGE|1|2|A|315
8BGE|1|2|C|316
*
8BGE|1|2|G|337
8BGE|1|2|A|338
8BGE|1|2|C|339
*
8BGE|1|2|G|350
8BGE|1|2|G|351
8BGE|1|2|C|352
8BGE|1|2|A|353
8BGE|1|2|G|354

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain H

50S ribosomal protein L14

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20