J5_8BH4_008

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8BH4|1|2|A|60, 8BH4|1|2|A|109, 8BH4|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BH4_008 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1376

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8BH4|1|2|C|58
8BH4|1|2|A|59
8BH4|1|2|A|60
8BH4|1|2|G|61
*
8BH4|1|2|C|106
8BH4|1|2|G|107
8BH4|1|2|G|108
8BH4|1|2|A|109
8BH4|1|2|C|110
8BH4|1|2|G|111
8BH4|1|2|G|112
8BH4|1|2|G|113
*
8BH4|1|2|C|314
8BH4|1|2|A|315
8BH4|1|2|C|316
*
8BH4|1|2|G|337
8BH4|1|2|A|338
8BH4|1|2|C|339
*
8BH4|1|2|G|350
8BH4|1|2|G|351
8BH4|1|2|C|352
8BH4|1|2|A|353
8BH4|1|2|G|354

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain H

50S ribosomal protein L14

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20