J5_8BH7_001
3D structure
- PDB id
- 8BH7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.23 Å
Loop
- Sequence
- CUGG*CGUG*CUGUUAU*AUCAGAAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BH7_001 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.3078
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BH7|1|a|C|37
8BH7|1|a|U|38
8BH7|1|a|G|39
8BH7|1|a|G|40
*
8BH7|1|a|C|411
8BH7|1|a|G|412
8BH7|1|a|U|413
8BH7|1|a|G|414
*
8BH7|1|a|C|444
8BH7|1|a|U|445
8BH7|1|a|G|446
8BH7|1|a|U|447
8BH7|1|a|U|448
8BH7|1|a|A|449
8BH7|1|a|U|450
*
8BH7|1|a|A|500
8BH7|1|a|U|501
8BH7|1|a|C|502
8BH7|1|a|A|503
8BH7|1|a|G|504
8BH7|1|a|A|505
8BH7|1|a|A|506
8BH7|1|a|A|507
8BH7|1|a|G|508
*
8BH7|1|a|C|553
8BH7|1|a|A|554
8BH7|1|a|A|555
8BH7|1|a|G|556
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: