J5_8BHF_001
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8BHF|1|C2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BHF_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0995
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BHF|1|A2|G|19
8BHF|1|A2|U|20
8BHF|1|A2|G|21
*
8BHF|1|C2|C|35
8BHF|1|C2|G|36
8BHF|1|C2|A|37
8BHF|1|C2|U|38
8BHF|1|C2|G|39
8BHF|1|C2|A|40
8BHF|1|C2|A|41
8BHF|1|C2|G|42
*
8BHF|1|C2|C|101
8BHF|1|C2|G|102
8BHF|1|C2|A|103
8BHF|1|C2|A|104
8BHF|1|C2|C|105
8BHF|1|C2|G|106
*
8BHF|1|C2|C|113
8BHF|1|C2|G|114
*
8BHF|1|C2|U|136
8BHF|1|C2|A|137
8BHF|1|C2|C|138
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain U1
- 60S ribosomal protein L35
- Chain W1
- Ribosomal protein L37
- Chain Y1
- 60S ribosomal protein L39-like
Coloring options: