J5_8BHF_002
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8BHF|1|A2|C|2292, 8BHF|1|A2|U|2353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BHF_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0623
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8BHF|1|A2|G|1333
8BHF|1|A2|G|1334
8BHF|1|A2|A|1335
8BHF|1|A2|G|1336
8BHF|1|A2|U|1337
8BHF|1|A2|C|1338
*
8BHF|1|A2|G|1516
8BHF|1|A2|G|1517
8BHF|1|A2|A|1518
8BHF|1|A2|C|1519
*
8BHF|1|A2|G|1658
8BHF|1|A2|U|1659
8BHF|1|A2|U|1660
8BHF|1|A2|C|1661
*
8BHF|1|A2|G|2291
8BHF|1|A2|C|2292
8BHF|1|A2|C|2293
*
8BHF|1|A2|G|2348
8BHF|1|A2|C|2349
8BHF|1|A2|A|2350
8BHF|1|A2|G|2351
8BHF|1|A2|A|2352
8BHF|1|A2|U|2353
8BHF|1|A2|C|2354
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N1
- 60S ribosomal protein L27a
- Chain R1
- Ribosomal protein L32
- Chain d1
- 60S ribosomal protein L28
- Chain l3
- 60S ribosomal protein L4
- Chain t3
- 60S ribosomal protein L13
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