J5_8BHF_003
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8BHF|1|A2|G|3615, 8BHF|1|A2|G|3620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BHF_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1205
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|G|2858
8BHF|1|A2|C|2859
8BHF|1|A2|A|2860
8BHF|1|A2|A|2861
8BHF|1|A2|G|2862
8BHF|1|A2|C|2863
8BHF|1|A2|C|2864
8BHF|1|A2|G|2865
8BHF|1|A2|G|2866
*
8BHF|1|A2|U|2890
8BHF|1|A2|G|2891
*
8BHF|1|A2|U|3608
8BHF|1|A2|G|3609
*
8BHF|1|A2|C|3613
8BHF|1|A2|G|3614
8BHF|1|A2|G|3615
8BHF|1|A2|A|3616
8BHF|1|A2|C|3617
8BHF|1|A2|C|3618
8BHF|1|A2|A|3619
8BHF|1|A2|G|3620
8BHF|1|A2|G|3621
*
8BHF|1|A2|C|3830
8BHF|1|A2|A|3831
8BHF|1|A2|C|3832
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- Small subunit ribosomal RNA; SSU rRNA
- Chain E1
- Ribosomal protein L19
- Chain I1
- 60S ribosomal protein L23
- Chain J1
- TRASH domain-containing protein
- Chain k3
- Ribosomal protein L3
Coloring options: