J5_8BHF_004
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8BHF|1|A2|A|3903, 8BHF|1|A2|A|4380, 8BHF|1|A2|G|4437, 8BHF|1|A2|U|4541, 8BHF|1|A2|U|4542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A2|A|3898
8BHF|1|A2|G|3899
8BHF|1|A2|A|3900
8BHF|1|A2|A|3901
8BHF|1|A2|G|3902
8BHF|1|A2|A|3903
8BHF|1|A2|C|3904
8BHF|1|A2|C|3905
*
8BHF|1|A2|G|4378
8BHF|1|A2|G|4379
8BHF|1|A2|A|4380
8BHF|1|A2|U|4381
8BHF|1|A2|A|4382
8BHF|1|A2|A|4383
8BHF|1|A2|C|4384
8BHF|1|A2|U|4385
8BHF|1|A2|G|4386
*
8BHF|1|A2|C|4430
8BHF|1|A2|U|4431
8BHF|1|A2|U|4432
8BHF|1|A2|C|4433
8BHF|1|A2|G|4434
8BHF|1|A2|A|4435
8BHF|1|A2|U|4436
8BHF|1|A2|G|4437
8BHF|1|A2|U|4438
8BHF|1|A2|C|4439
*
8BHF|1|A2|G|4514
8BHF|1|A2|G|4515
8BHF|1|A2|U|4516
8BHF|1|A2|U|4517
8BHF|1|A2|U|4518
8BHF|1|A2|A|4519
8BHF|1|A2|G|4520
*
8BHF|1|A2|U|4538
8BHF|1|A2|A|4539
8BHF|1|A2|G|4540
8BHF|1|A2|U|4541
8BHF|1|A2|U|4542
8BHF|1|A2|U|4543
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain 11
- nascent chain
- Chain 21
- Transfer RNA; tRNA
- Chain N1
- 60S ribosomal protein L27a
- Chain O1
- 60S ribosomal protein L29
- Chain j3
- 60S ribosomal protein L8
- Chain k3
- Ribosomal protein L3
- Chain l3
- 60S ribosomal protein L4
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