J5_8BHF_005
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8BHF|1|A2|G|3917, 8BHF|1|A2|A|4362, 8BHF|1|A2|G|4363, 8BHF|1|A2|A|4364, 8BHF|1|A2|A|4365
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BHF_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3004
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BHF|1|A2|U|3915
8BHF|1|A2|U|3916
8BHF|1|A2|G|3917
8BHF|1|A2|A|3918
*
8BHF|1|A2|U|4174
8BHF|1|A2|U|4175
8BHF|1|A2|U|4176
8BHF|1|A2|G|4177
*
8BHF|1|A2|C|4190
8BHF|1|A2|A|4191
*
8BHF|1|A2|U|4213
8BHF|1|A2|G|4214
*
8BHF|1|A2|C|4361
8BHF|1|A2|A|4362
8BHF|1|A2|G|4363
8BHF|1|A2|A|4364
8BHF|1|A2|A|4365
8BHF|1|A2|A|4366
8BHF|1|A2|A|4367
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain 21
- Transfer RNA; tRNA
- Chain A1
- Ribosomal protein L15
- Chain D1
- Ribosomal protein L18
- Chain G1
- 60S ribosomal protein L21
- Chain N1
- 60S ribosomal protein L27a
- Chain O1
- 60S ribosomal protein L29
- Chain b1
- Ribosomal protein L36a like
- Chain j3
- 60S ribosomal protein L8
- Chain n1
- CCR4-NOT transcription complex subunit 3
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