J5_8BHF_007

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A3|C|30
8BHF|1|A3|U|31
8BHF|1|A3|U|32
8BHF|1|A3|G|33
8BHF|1|A3|U|34
*
8BHF|1|A3|A|521
8BHF|1|A3|A|522
8BHF|1|A3|A|523
8BHF|1|A3|U|524
8BHF|1|A3|A|525
8BHF|1|A3|A|526
8BHF|1|A3|C|527
*
8BHF|1|A3|G|558
8BHF|1|A3|G|559
8BHF|1|A3|A|560
8BHF|1|A3|A|561
8BHF|1|A3|U|562
8BHF|1|A3|G|563
8BHF|1|A3|A|564
8BHF|1|A3|G|565
*
8BHF|1|A3|C|585
8BHF|1|A3|G|586
8BHF|1|A3|A|587
8BHF|1|A3|G|588
8BHF|1|A3|G|589
8BHF|1|A3|A|590
8BHF|1|A3|U|591
8BHF|1|A3|C|592
8BHF|1|A3|C|593
8BHF|1|A3|A|594
8BHF|1|A3|U|595
*
8BHF|1|A3|A|641
8BHF|1|A3|U|642
8BHF|1|A3|A|643
8BHF|1|A3|G|644

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain K3

Ribosomal protein S9 (Predicted)

Chain Y3

Ribosomal protein S23

Chain f3

Ubiquitin-like domain-containing protein