J5_8BHF_010
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 8BHF|1|A3|C|687, 8BHF|1|A3|U|871, 8BHF|1|A3|G|873, 8BHF|1|A3|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHF|1|A3|A|685
8BHF|1|A3|U|686
8BHF|1|A3|C|687
8BHF|1|A3|U|688
8BHF|1|A3|U|689
8BHF|1|A3|G|690
*
8BHF|1|A3|C|736
8BHF|1|A3|U|743
8BHF|1|A3|G|744
*
8BHF|1|A3|C|797
8BHF|1|A3|G|798
8BHF|1|A3|U|799
8BHF|1|A3|U|800
*
8BHF|1|A3|A|865
8BHF|1|A3|U|866
8BHF|1|A3|G|867
8BHF|1|A3|G|868
8BHF|1|A3|A|869
8BHF|1|A3|A|870
8BHF|1|A3|U|871
8BHF|1|A3|A|872
8BHF|1|A3|G|873
8BHF|1|A3|G|874
*
8BHF|1|A3|C|912
8BHF|1|A3|A|913
8BHF|1|A3|U|914
8BHF|1|A3|G|915
8BHF|1|A3|A|916
8BHF|1|A3|U|917
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain E1
- Ribosomal protein L19
- Chain F3
- 40S ribosomal protein S4
- Chain I3
- 40S ribosomal protein S7
- Chain M3
- 40S ribosomal protein S11
- Chain O3
- ribosomal protein uS15
- Chain X3
- Ribosomal protein S15a
- Chain Y3
- Ribosomal protein S23
Coloring options: