3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8BHJ|1|0|U|1758, 8BHJ|1|0|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BHJ_003 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.1445
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8BHJ|1|0|G|1674
8BHJ|1|0|C|1675
8BHJ|1|0|A|1676
8BHJ|1|0|A|1677
8BHJ|1|0|A|1678
8BHJ|1|0|A|1679
8BHJ|1|0|U|1680
8BHJ|1|0|G|1681
8BHJ|1|0|G|1682
*
8BHJ|1|0|C|1706
8BHJ|1|0|G|1707
*
8BHJ|1|0|U|1751
8BHJ|1|0|C|1752
*
8BHJ|1|0|G|1756
8BHJ|1|0|A|1757
8BHJ|1|0|U|1758
8BHJ|1|0|A|1759
8BHJ|1|0|C|1760
8BHJ|1|0|C|1761
8BHJ|1|0|A|1762
8BHJ|1|0|G|1763
8BHJ|1|0|C|1764
*
8BHJ|1|0|G|1988
8BHJ|1|0|G|1989
8BHJ|1|0|C|1990

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L3
Chain H
50S ribosomal protein L14
Chain M
50S ribosomal protein L19

Coloring options:


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