3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
8BHN|1|0|A|532, 8BHN|1|0|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BHN_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.1426
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8BHN|1|0|C|531
8BHN|1|0|A|532
8BHN|1|0|G|533
*
8BHN|1|0|C|560
8BHN|1|0|G|561
8BHN|1|0|U|562
8BHN|1|0|A|563
8BHN|1|0|C|564
*
8BHN|1|0|G|577
8BHN|1|0|G|578
8BHN|1|0|G|579
*
8BHN|1|0|C|1261
8BHN|1|0|A|1262
*
8BHN|1|0|U|2017
8BHN|1|0|G|2018

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain N
50S ribosomal protein L20
Chain O
50S ribosomal protein L21
Chain P
50S ribosomal protein L22
Chain a
50S ribosomal protein L32

Coloring options:


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