3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8BHP|1|0|U|1758, 8BHP|1|0|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BHP_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.133
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8BHP|1|0|G|1674
8BHP|1|0|C|1675
8BHP|1|0|A|1676
8BHP|1|0|A|1677
8BHP|1|0|A|1678
8BHP|1|0|A|1679
8BHP|1|0|U|1680
8BHP|1|0|G|1681
8BHP|1|0|G|1682
*
8BHP|1|0|C|1706
8BHP|1|0|G|1707
*
8BHP|1|0|U|1751
8BHP|1|0|C|1752
*
8BHP|1|0|G|1756
8BHP|1|0|A|1757
8BHP|1|0|U|1758
8BHP|1|0|A|1759
8BHP|1|0|C|1760
8BHP|1|0|C|1761
8BHP|1|0|A|1762
8BHP|1|0|G|1763
8BHP|1|0|C|1764
*
8BHP|1|0|G|1988
8BHP|1|0|G|1989
8BHP|1|0|C|1990

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L3
Chain H
50S ribosomal protein L14
Chain M
50S ribosomal protein L19

Coloring options:


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