J5_8BHP_009

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8BHP|1|2|A|60, 8BHP|1|2|A|109, 8BHP|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BHP_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1331

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8BHP|1|2|C|58
8BHP|1|2|A|59
8BHP|1|2|A|60
8BHP|1|2|G|61
*
8BHP|1|2|C|106
8BHP|1|2|G|107
8BHP|1|2|G|108
8BHP|1|2|A|109
8BHP|1|2|C|110
8BHP|1|2|G|111
8BHP|1|2|G|112
8BHP|1|2|G|113
*
8BHP|1|2|C|314
8BHP|1|2|A|315
8BHP|1|2|C|316
*
8BHP|1|2|G|337
8BHP|1|2|A|338
8BHP|1|2|C|339
*
8BHP|1|2|G|350
8BHP|1|2|G|351
8BHP|1|2|C|352
8BHP|1|2|A|353
8BHP|1|2|G|354

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain H

50S ribosomal protein L14

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20