J5_8BIL_009

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8BIL|1|2|A|60, 8BIL|1|2|A|109, 8BIL|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BIL_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1353

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8BIL|1|2|C|58
8BIL|1|2|A|59
8BIL|1|2|A|60
8BIL|1|2|G|61
*
8BIL|1|2|C|106
8BIL|1|2|G|107
8BIL|1|2|G|108
8BIL|1|2|A|109
8BIL|1|2|C|110
8BIL|1|2|G|111
8BIL|1|2|G|112
8BIL|1|2|G|113
*
8BIL|1|2|C|314
8BIL|1|2|A|315
8BIL|1|2|C|316
*
8BIL|1|2|G|337
8BIL|1|2|A|338
8BIL|1|2|C|339
*
8BIL|1|2|G|350
8BIL|1|2|G|351
8BIL|1|2|C|352
8BIL|1|2|A|353
8BIL|1|2|G|354

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain H

50S ribosomal protein L14

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20