J5_8BIM_004
3D structure
- PDB id
- 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 8BIM|1|0|U|1758, 8BIM|1|0|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BIM_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1276
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BIM|1|0|G|1674
8BIM|1|0|C|1675
8BIM|1|0|A|1676
8BIM|1|0|A|1677
8BIM|1|0|A|1678
8BIM|1|0|A|1679
8BIM|1|0|U|1680
8BIM|1|0|G|1681
8BIM|1|0|G|1682
*
8BIM|1|0|C|1706
8BIM|1|0|G|1707
*
8BIM|1|0|U|1751
8BIM|1|0|C|1752
*
8BIM|1|0|G|1756
8BIM|1|0|A|1757
8BIM|1|0|U|1758
8BIM|1|0|A|1759
8BIM|1|0|C|1760
8BIM|1|0|C|1761
8BIM|1|0|A|1762
8BIM|1|0|G|1763
8BIM|1|0|C|1764
*
8BIM|1|0|G|1988
8BIM|1|0|G|1989
8BIM|1|0|C|1990
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
- Chain M
- 50S ribosomal protein L19
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