J5_8BIM_009

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8BIM|1|2|A|60, 8BIM|1|2|A|109, 8BIM|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BIM_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1327

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8BIM|1|2|C|58
8BIM|1|2|A|59
8BIM|1|2|A|60
8BIM|1|2|G|61
*
8BIM|1|2|C|106
8BIM|1|2|G|107
8BIM|1|2|G|108
8BIM|1|2|A|109
8BIM|1|2|C|110
8BIM|1|2|G|111
8BIM|1|2|G|112
8BIM|1|2|G|113
*
8BIM|1|2|C|314
8BIM|1|2|A|315
8BIM|1|2|C|316
*
8BIM|1|2|G|337
8BIM|1|2|A|338
8BIM|1|2|C|339
*
8BIM|1|2|G|350
8BIM|1|2|G|351
8BIM|1|2|C|352
8BIM|1|2|A|353
8BIM|1|2|G|354

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain H

50S ribosomal protein L14

Chain t

30S ribosomal protein S16

Chain x

30S ribosomal protein S20