3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
Length
27 nucleotides
Bulged bases
8BIP|1|1|U|719, 8BIP|1|1|A|784, 8BIP|1|1|G|785
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BIP_003 not in the Motif Atlas
Homologous match to J5_8P9A_012
Geometric discrepancy: 0.0756
The information below is about J5_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_23272.1
Basepair signature
cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8BIP|1|1|C|675
8BIP|1|1|G|676
8BIP|1|1|A|677
8BIP|1|1|G|678
*
8BIP|1|1|C|702
8BIP|1|1|G|703
8BIP|1|1|U|704
8BIP|1|1|A|705
8BIP|1|1|A|706
*
8BIP|1|1|U|713
8BIP|1|1|G|714
8BIP|1|1|A|715
8BIP|1|1|A|716
8BIP|1|1|C|717
8BIP|1|1|G|718
8BIP|1|1|U|719
8BIP|1|1|A|720
8BIP|1|1|G|721
*
8BIP|1|1|C|749
8BIP|1|1|G|750
8BIP|1|1|A|751
*
8BIP|1|1|U|782
8BIP|1|1|A|783
8BIP|1|1|A|784
8BIP|1|1|G|785
8BIP|1|1|A|786
8BIP|1|1|G|787

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4-A
Chain LL
60S ribosomal protein L13-A
Chain LQ
60S ribosomal protein L18-A
Chain La
60S ribosomal protein L28
Chain Lb
60S ribosomal protein L29
Chain Li
60S ribosomal protein L36-A

Coloring options:


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