3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
8BN3|1|4|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BN3_001 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.0523
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8BN3|1|1|A|20
8BN3|1|1|G|21
8BN3|1|1|G|22
*
8BN3|1|4|C|35
8BN3|1|4|G|36
8BN3|1|4|A|37
8BN3|1|4|U|38
8BN3|1|4|G|39
8BN3|1|4|A|40
8BN3|1|4|A|41
8BN3|1|4|G|42
*
8BN3|1|4|U|102
8BN3|1|4|G|103
8BN3|1|4|A|104
8BN3|1|4|A|105
8BN3|1|4|C|106
8BN3|1|4|G|107
*
8BN3|1|4|C|115
8BN3|1|4|G|116
*
8BN3|1|4|C|137
8BN3|1|4|A|138
8BN3|1|4|U|139

Current chains

Chain 1
25S ribosomal RNA
Chain 4
5.8S ribosomal RNA

Nearby chains

Chain M5
Ribosomal protein L15
Chain N5
60S ribosomal protein L25
Chain O5
60S ribosomal protein L35-A
Chain O7
Large ribosomal subunit protein eL37A
Chain O9
60S ribosomal protein L39

Coloring options:


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