3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
8BN3|1|2|A|93, 8BN3|1|2|C|424
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BN3_008 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0592
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8BN3|1|2|C|54
8BN3|1|2|A|55
8BN3|1|2|U|56
8BN3|1|2|G|57
*
8BN3|1|2|C|90
8BN3|1|2|G|91
8BN3|1|2|A|92
8BN3|1|2|A|93
8BN3|1|2|U|94
8BN3|1|2|G|95
8BN3|1|2|G|96
8BN3|1|2|C|97
*
8BN3|1|2|G|386
8BN3|1|2|A|387
8BN3|1|2|G|388
*
8BN3|1|2|C|409
8BN3|1|2|A|410
8BN3|1|2|C|411
*
8BN3|1|2|G|422
8BN3|1|2|G|423
8BN3|1|2|C|424
8BN3|1|2|A|425
8BN3|1|2|G|426

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D4
40S ribosomal protein S24-A
Chain N3
60S ribosomal protein L23-A
Chain S4
Small ribosomal subunit protein eS4A
Chain S6
Small ribosomal subunit protein eS6A
Chain S8
40S ribosomal protein S8
Chain S9
Small ribosomal subunit protein uS4A

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