J5_8BPO_001
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 8BPO|1|C1|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BPO_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1104
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BPO|1|A1|G|19
8BPO|1|A1|U|20
8BPO|1|A1|G|21
*
8BPO|1|C1|C|35
8BPO|1|C1|G|36
8BPO|1|C1|A|37
8BPO|1|C1|U|38
8BPO|1|C1|G|39
8BPO|1|C1|A|40
8BPO|1|C1|A|41
8BPO|1|C1|G|42
*
8BPO|1|C1|C|101
8BPO|1|C1|G|102
8BPO|1|C1|A|103
8BPO|1|C1|A|104
8BPO|1|C1|C|105
8BPO|1|C1|G|106
*
8BPO|1|C1|C|113
8BPO|1|C1|G|114
*
8BPO|1|C1|U|136
8BPO|1|C1|A|137
8BPO|1|C1|C|138
Current chains
- Chain A1
- 28S ribosomal RNA
- Chain C1
- 5.8S ribosomal RNA
Nearby chains
- Chain M2
- Ribosomal protein L15
- Chain W2
- Ribosomal_L23eN domain-containing protein
- Chain g2
- 60S ribosomal protein L35
- Chain i2
- Ribosomal protein L37
- Chain k2
- 60S ribosomal protein L39-like
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