J5_8BPO_003
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8BPO|1|A1|C|2289, 8BPO|1|A1|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BPO_003 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0608
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|G|1335
8BPO|1|A1|G|1336
8BPO|1|A1|A|1337
8BPO|1|A1|G|1338
8BPO|1|A1|U|1339
8BPO|1|A1|C|1340
*
8BPO|1|A1|G|1516
8BPO|1|A1|G|1517
8BPO|1|A1|A|1518
8BPO|1|A1|C|1519
*
8BPO|1|A1|G|1658
8BPO|1|A1|U|1659
8BPO|1|A1|U|1660
8BPO|1|A1|C|1661
*
8BPO|1|A1|G|2288
8BPO|1|A1|C|2289
8BPO|1|A1|C|2290
*
8BPO|1|A1|G|2345
8BPO|1|A1|C|2346
8BPO|1|A1|A|2347
8BPO|1|A1|G|2348
8BPO|1|A1|A|2349
8BPO|1|A1|U|2350
8BPO|1|A1|C|2351
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- 60S ribosomal protein L4
- Chain K2
- 60S ribosomal protein L13
- Chain M2
- Ribosomal protein L15
- Chain Z2
- 60S ribosomal protein L27a
- Chain d2
- Ribosomal protein L32
- Chain p2
- 60S ribosomal protein L28
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