J5_8BPO_006
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8BPO|1|A1|G|3922, 8BPO|1|A1|A|4376, 8BPO|1|A1|G|4377, 8BPO|1|A1|A|4378, 8BPO|1|A1|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BPO_006 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3051
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|U|3920
8BPO|1|A1|U|3921
8BPO|1|A1|G|3922
8BPO|1|A1|A|3923
*
8BPO|1|A1|U|4188
8BPO|1|A1|U|4189
8BPO|1|A1|U|4190
8BPO|1|A1|G|4191
*
8BPO|1|A1|C|4204
8BPO|1|A1|A|4205
*
8BPO|1|A1|U|4227
8BPO|1|A1|G|4228
*
8BPO|1|A1|C|4375
8BPO|1|A1|A|4376
8BPO|1|A1|G|4377
8BPO|1|A1|A|4378
8BPO|1|A1|A|4379
8BPO|1|A1|A|4380
8BPO|1|A1|A|4381
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain M2
- Ribosomal protein L15
- Chain P2
- Ribosomal protein L18
- Chain S2
- 60S ribosomal protein L21
- Chain Z2
- 60S ribosomal protein L27a
- Chain a2
- 60S ribosomal protein L29
- Chain n2
- 60S ribosomal protein L36a-like
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