J5_8BQD_001

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8BQD|1|2|A|541, 8BQD|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|2|C|31
8BQD|1|2|U|32
8BQD|1|2|U|33
8BQD|1|2|G|34
8BQD|1|2|U|35
*
8BQD|1|2|A|473
8BQD|1|2|A|474
8BQD|1|2|A|475
8BQD|1|2|U|476
8BQD|1|2|A|477
8BQD|1|2|A|478
8BQD|1|2|C|479
*
8BQD|1|2|G|509
8BQD|1|2|G|510
8BQD|1|2|A|511
8BQD|1|2|A|512
8BQD|1|2|U|513
8BQD|1|2|G|514
8BQD|1|2|A|515
8BQD|1|2|G|516
*
8BQD|1|2|C|536
8BQD|1|2|G|537
8BQD|1|2|A|538
8BQD|1|2|G|539
8BQD|1|2|G|540
8BQD|1|2|A|541
8BQD|1|2|A|542
8BQD|1|2|C|543
8BQD|1|2|A|544
8BQD|1|2|A|545
8BQD|1|2|U|546
*
8BQD|1|2|A|592
8BQD|1|2|U|593
8BQD|1|2|A|594
8BQD|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A