J5_8BQD_005
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUUUGG*CUUUCCUU*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 8BQD|1|2|U|639, 8BQD|1|2|U|694, 8BQD|1|2|C|696, 8BQD|1|2|C|697, 8BQD|1|2|U|813, 8BQD|1|2|G|815, 8BQD|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQD|1|2|A|636
8BQD|1|2|C|637
8BQD|1|2|U|638
8BQD|1|2|U|639
8BQD|1|2|U|640
8BQD|1|2|G|641
8BQD|1|2|G|642
*
8BQD|1|2|C|692
8BQD|1|2|U|693
8BQD|1|2|U|694
8BQD|1|2|U|695
8BQD|1|2|C|696
8BQD|1|2|C|697
8BQD|1|2|U|698
8BQD|1|2|U|699
*
8BQD|1|2|G|739
8BQD|1|2|A|740
8BQD|1|2|C|741
8BQD|1|2|U|742
8BQD|1|2|U|743
8BQD|1|2|U|744
*
8BQD|1|2|A|807
8BQD|1|2|U|808
8BQD|1|2|A|809
8BQD|1|2|G|810
8BQD|1|2|A|811
8BQD|1|2|A|812
8BQD|1|2|U|813
8BQD|1|2|A|814
8BQD|1|2|G|815
8BQD|1|2|G|816
8BQD|1|2|A|817
8BQD|1|2|C|818
8BQD|1|2|G|819
8BQD|1|2|U|820
8BQD|1|2|U|821
8BQD|1|2|U|822
*
8BQD|1|2|A|850
8BQD|1|2|U|851
8BQD|1|2|C|852
8BQD|1|2|G|853
8BQD|1|2|U|854
8BQD|1|2|A|855
8BQD|1|2|A|856
8BQD|1|2|U|857
8BQD|1|2|G|858
8BQD|1|2|A|859
8BQD|1|2|U|860
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain BF
- 60S ribosomal protein L19-A
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- RPS22A isoform 1
Coloring options: