3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
ACUUUGG*CUUUCCUU*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
Length
48 nucleotides
Bulged bases
8BQD|1|2|U|639, 8BQD|1|2|U|694, 8BQD|1|2|C|696, 8BQD|1|2|C|697, 8BQD|1|2|U|813, 8BQD|1|2|G|815, 8BQD|1|2|A|856
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BQD|1|2|A|636
8BQD|1|2|C|637
8BQD|1|2|U|638
8BQD|1|2|U|639
8BQD|1|2|U|640
8BQD|1|2|G|641
8BQD|1|2|G|642
*
8BQD|1|2|C|692
8BQD|1|2|U|693
8BQD|1|2|U|694
8BQD|1|2|U|695
8BQD|1|2|C|696
8BQD|1|2|C|697
8BQD|1|2|U|698
8BQD|1|2|U|699
*
8BQD|1|2|G|739
8BQD|1|2|A|740
8BQD|1|2|C|741
8BQD|1|2|U|742
8BQD|1|2|U|743
8BQD|1|2|U|744
*
8BQD|1|2|A|807
8BQD|1|2|U|808
8BQD|1|2|A|809
8BQD|1|2|G|810
8BQD|1|2|A|811
8BQD|1|2|A|812
8BQD|1|2|U|813
8BQD|1|2|A|814
8BQD|1|2|G|815
8BQD|1|2|G|816
8BQD|1|2|A|817
8BQD|1|2|C|818
8BQD|1|2|G|819
8BQD|1|2|U|820
8BQD|1|2|U|821
8BQD|1|2|U|822
*
8BQD|1|2|A|850
8BQD|1|2|U|851
8BQD|1|2|C|852
8BQD|1|2|G|853
8BQD|1|2|U|854
8BQD|1|2|A|855
8BQD|1|2|A|856
8BQD|1|2|U|857
8BQD|1|2|G|858
8BQD|1|2|A|859
8BQD|1|2|U|860

Current chains

Chain 2
18S rRNA

Nearby chains

Chain BF
60S ribosomal protein L19-A
Chain U
40S ribosomal protein S7-A
Chain X
40S ribosomal protein S11-A
Chain Y
40S ribosomal protein S13
Chain b
RPS22A isoform 1

Coloring options:

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