J5_8BQD_009
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8BQD|1|BQ|G|2116, 8BQD|1|BQ|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BQD_009 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0954
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQD|1|BQ|G|1906
8BQD|1|BQ|C|1907
8BQD|1|BQ|A|1908
8BQD|1|BQ|A|1909
8BQD|1|BQ|A|1910
8BQD|1|BQ|A|1911
8BQD|1|BQ|U|1912
8BQD|1|BQ|A|1913
8BQD|1|BQ|G|1914
*
8BQD|1|BQ|U|1938
8BQD|1|BQ|G|1939
*
8BQD|1|BQ|U|2109
8BQD|1|BQ|G|2110
*
8BQD|1|BQ|C|2114
8BQD|1|BQ|G|2115
8BQD|1|BQ|G|2116
8BQD|1|BQ|A|2117
8BQD|1|BQ|C|2118
8BQD|1|BQ|A|2119
8BQD|1|BQ|A|2120
8BQD|1|BQ|G|2121
8BQD|1|BQ|G|2122
*
8BQD|1|BQ|C|2331
8BQD|1|BQ|A|2332
8BQD|1|BQ|C|2333
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AB
- 60S ribosomal protein L23-A
- Chain AE
- 60S ribosomal protein L24-A
- Chain BA
- 60S ribosomal protein L3
- Chain BF
- 60S ribosomal protein L19-A
Coloring options: