3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length
40 nucleotides
Bulged bases
8BQD|1|BQ|A|2404, 8BQD|1|BQ|A|2817, 8BQD|1|BQ|U|2873, 8BQD|1|BQ|U|2978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BQD|1|BQ|A|2399
8BQD|1|BQ|G|2400
8BQD|1|BQ|A|2401
8BQD|1|BQ|A|2402
8BQD|1|BQ|G|2403
8BQD|1|BQ|A|2404
8BQD|1|BQ|C|2405
8BQD|1|BQ|C|2406
*
8BQD|1|BQ|G|2815
8BQD|1|BQ|G|2816
8BQD|1|BQ|A|2817
8BQD|1|BQ|U|2818
8BQD|1|BQ|A|2819
8BQD|1|BQ|A|2820
8BQD|1|BQ|C|2821
8BQD|1|BQ|U|2822
8BQD|1|BQ|G|2823
*
8BQD|1|BQ|C|2867
8BQD|1|BQ|U|2868
8BQD|1|BQ|U|2869
8BQD|1|BQ|C|2870
8BQD|1|BQ|G|2871
8BQD|1|BQ|A|2872
8BQD|1|BQ|U|2873
8BQD|1|BQ|G|2874
8BQD|1|BQ|U|2875
8BQD|1|BQ|C|2876
*
8BQD|1|BQ|G|2951
8BQD|1|BQ|G|2952
8BQD|1|BQ|U|2953
8BQD|1|BQ|U|2954
8BQD|1|BQ|U|2955
8BQD|1|BQ|A|2956
8BQD|1|BQ|G|2957
*
8BQD|1|BQ|U|2975
8BQD|1|BQ|A|2976
8BQD|1|BQ|G|2977
8BQD|1|BQ|U|2978
8BQD|1|BQ|U|2979
8BQD|1|BQ|U|2980

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AR
60S ribosomal protein L28
Chain AV
60S ribosomal protein L29
Chain AW
60S ribosomal protein L2-A
Chain AX
60S ribosomal protein L17-A
Chain BA
60S ribosomal protein L3
Chain BD
RPL10 isoform 1
Chain BE
RPL4A isoform 1

Coloring options:

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