J5_8BQD_011
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8BQD|1|BQ|G|2418, 8BQD|1|BQ|A|2799, 8BQD|1|BQ|G|2800, 8BQD|1|BQ|A|2801, 8BQD|1|BQ|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BQD_011 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2789
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BQD|1|BQ|U|2416
8BQD|1|BQ|U|2417
8BQD|1|BQ|G|2418
8BQD|1|BQ|A|2419
*
8BQD|1|BQ|U|2611
8BQD|1|BQ|U|2612
8BQD|1|BQ|U|2613
8BQD|1|BQ|G|2614
*
8BQD|1|BQ|C|2627
8BQD|1|BQ|A|2628
*
8BQD|1|BQ|U|2650
8BQD|1|BQ|G|2651
*
8BQD|1|BQ|C|2798
8BQD|1|BQ|A|2799
8BQD|1|BQ|G|2800
8BQD|1|BQ|A|2801
8BQD|1|BQ|A|2802
8BQD|1|BQ|A|2803
8BQD|1|BQ|A|2804
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain AW
- 60S ribosomal protein L2-A
- Chain BB
- 60S ribosomal protein L18-A
- Chain BJ
- 60S ribosomal protein L21-A
Coloring options: