J5_8BQD_013

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

8BQD|1|2|U|128, 8BQD|1|2|C|130, 8BQD|1|2|C|131, 8BQD|1|2|U|132, 8BQD|1|2|U|133, 8BQD|1|2|U|134, 8BQD|1|2|U|137, 8BQD|1|2|A|140, 8BQD|1|2|U|141, 8BQD|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQD|1|2|A|124
8BQD|1|2|U|125
8BQD|1|2|A|126
8BQD|1|2|G|127
8BQD|1|2|U|128
8BQD|1|2|U|129
8BQD|1|2|C|130
8BQD|1|2|C|131
8BQD|1|2|U|132
8BQD|1|2|U|133
8BQD|1|2|U|134
8BQD|1|2|A|135
8BQD|1|2|C|136
8BQD|1|2|U|137
8BQD|1|2|A|138
8BQD|1|2|C|139
8BQD|1|2|A|140
8BQD|1|2|U|141
8BQD|1|2|G|142
8BQD|1|2|G|143
*
8BQD|1|2|C|172
8BQD|1|2|A|173
8BQD|1|2|U|174
8BQD|1|2|G|175
8BQD|1|2|C|176
8BQD|1|2|U|177
8BQD|1|2|U|178
8BQD|1|2|A|179
8BQD|1|2|A|180
8BQD|1|2|A|181
8BQD|1|2|A|182
*
8BQD|1|2|U|203
8BQD|1|2|G|204
*
8BQD|1|2|C|263
8BQD|1|2|G|264
8BQD|1|2|A|265
8BQD|1|2|A|266
8BQD|1|2|U|267
*
8BQD|1|2|A|288
8BQD|1|2|U|289
8BQD|1|2|G|290
8BQD|1|2|G|291
8BQD|1|2|U|292
8BQD|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-B