J5_8BQX_001

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8BQX|1|2|A|541, 8BQX|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|2|C|31
8BQX|1|2|U|32
8BQX|1|2|U|33
8BQX|1|2|G|34
8BQX|1|2|U|35
*
8BQX|1|2|A|473
8BQX|1|2|A|474
8BQX|1|2|A|475
8BQX|1|2|U|476
8BQX|1|2|A|477
8BQX|1|2|A|478
8BQX|1|2|C|479
*
8BQX|1|2|G|509
8BQX|1|2|G|510
8BQX|1|2|A|511
8BQX|1|2|A|512
8BQX|1|2|U|513
8BQX|1|2|G|514
8BQX|1|2|A|515
8BQX|1|2|G|516
*
8BQX|1|2|C|536
8BQX|1|2|G|537
8BQX|1|2|A|538
8BQX|1|2|G|539
8BQX|1|2|G|540
8BQX|1|2|A|541
8BQX|1|2|A|542
8BQX|1|2|C|543
8BQX|1|2|A|544
8BQX|1|2|A|545
8BQX|1|2|U|546
*
8BQX|1|2|A|592
8BQX|1|2|U|593
8BQX|1|2|A|594
8BQX|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A