J5_8BQX_005

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUGG*CUUUCCUU*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU

Length

48 nucleotides

Bulged bases

8BQX|1|2|U|639, 8BQX|1|2|U|694, 8BQX|1|2|C|696, 8BQX|1|2|C|697, 8BQX|1|2|U|813, 8BQX|1|2|G|815, 8BQX|1|2|A|856

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|2|A|636
8BQX|1|2|C|637
8BQX|1|2|U|638
8BQX|1|2|U|639
8BQX|1|2|U|640
8BQX|1|2|G|641
8BQX|1|2|G|642
*
8BQX|1|2|C|692
8BQX|1|2|U|693
8BQX|1|2|U|694
8BQX|1|2|U|695
8BQX|1|2|C|696
8BQX|1|2|C|697
8BQX|1|2|U|698
8BQX|1|2|U|699
*
8BQX|1|2|G|739
8BQX|1|2|A|740
8BQX|1|2|C|741
8BQX|1|2|U|742
8BQX|1|2|U|743
8BQX|1|2|U|744
*
8BQX|1|2|A|807
8BQX|1|2|U|808
8BQX|1|2|A|809
8BQX|1|2|G|810
8BQX|1|2|A|811
8BQX|1|2|A|812
8BQX|1|2|U|813
8BQX|1|2|A|814
8BQX|1|2|G|815
8BQX|1|2|G|816
8BQX|1|2|A|817
8BQX|1|2|C|818
8BQX|1|2|G|819
8BQX|1|2|U|820
8BQX|1|2|U|821
8BQX|1|2|U|822
*
8BQX|1|2|A|850
8BQX|1|2|U|851
8BQX|1|2|C|852
8BQX|1|2|G|853
8BQX|1|2|U|854
8BQX|1|2|A|855
8BQX|1|2|A|856
8BQX|1|2|U|857
8BQX|1|2|G|858
8BQX|1|2|A|859
8BQX|1|2|U|860

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A