J5_8BQX_006
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8BQX|1|BS|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BQX_006 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0723
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BQX|1|BQ|A|20
8BQX|1|BQ|G|21
8BQX|1|BQ|G|22
*
8BQX|1|BS|C|35
8BQX|1|BS|G|36
8BQX|1|BS|A|37
8BQX|1|BS|U|38
8BQX|1|BS|G|39
8BQX|1|BS|A|40
8BQX|1|BS|A|41
8BQX|1|BS|G|42
*
8BQX|1|BS|U|102
8BQX|1|BS|G|103
8BQX|1|BS|A|104
8BQX|1|BS|A|105
8BQX|1|BS|C|106
8BQX|1|BS|G|107
*
8BQX|1|BS|C|115
8BQX|1|BS|G|116
*
8BQX|1|BS|C|137
8BQX|1|BS|A|138
8BQX|1|BS|U|139
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AH
- 60S ribosomal protein L25
- Chain AL
- 60S ribosomal protein L39
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BP
- 60S ribosomal protein L35-A
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