3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GCAAAAUAG*UG*UG*CGGACAAGG*CAC
Length
25 nucleotides
Bulged bases
8BQX|1|BQ|G|2116, 8BQX|1|BQ|G|2121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BQX_009 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.0954
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BQX|1|BQ|G|1906
8BQX|1|BQ|C|1907
8BQX|1|BQ|A|1908
8BQX|1|BQ|A|1909
8BQX|1|BQ|A|1910
8BQX|1|BQ|A|1911
8BQX|1|BQ|U|1912
8BQX|1|BQ|A|1913
8BQX|1|BQ|G|1914
*
8BQX|1|BQ|U|1938
8BQX|1|BQ|G|1939
*
8BQX|1|BQ|U|2109
8BQX|1|BQ|G|2110
*
8BQX|1|BQ|C|2114
8BQX|1|BQ|G|2115
8BQX|1|BQ|G|2116
8BQX|1|BQ|A|2117
8BQX|1|BQ|C|2118
8BQX|1|BQ|A|2119
8BQX|1|BQ|A|2120
8BQX|1|BQ|G|2121
8BQX|1|BQ|G|2122
*
8BQX|1|BQ|C|2331
8BQX|1|BQ|A|2332
8BQX|1|BQ|C|2333

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain AB
60S ribosomal protein L23-A
Chain AE
60S ribosomal protein L24-A
Chain BA
60S ribosomal protein L3
Chain BF
60S ribosomal protein L19-A

Coloring options:


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