J5_8BQX_013

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

8BQX|1|2|U|128, 8BQX|1|2|C|130, 8BQX|1|2|C|131, 8BQX|1|2|U|132, 8BQX|1|2|U|133, 8BQX|1|2|U|134, 8BQX|1|2|U|137, 8BQX|1|2|A|140, 8BQX|1|2|U|141, 8BQX|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BQX|1|2|A|124
8BQX|1|2|U|125
8BQX|1|2|A|126
8BQX|1|2|G|127
8BQX|1|2|U|128
8BQX|1|2|U|129
8BQX|1|2|C|130
8BQX|1|2|C|131
8BQX|1|2|U|132
8BQX|1|2|U|133
8BQX|1|2|U|134
8BQX|1|2|A|135
8BQX|1|2|C|136
8BQX|1|2|U|137
8BQX|1|2|A|138
8BQX|1|2|C|139
8BQX|1|2|A|140
8BQX|1|2|U|141
8BQX|1|2|G|142
8BQX|1|2|G|143
*
8BQX|1|2|C|172
8BQX|1|2|A|173
8BQX|1|2|U|174
8BQX|1|2|G|175
8BQX|1|2|C|176
8BQX|1|2|U|177
8BQX|1|2|U|178
8BQX|1|2|A|179
8BQX|1|2|A|180
8BQX|1|2|A|181
8BQX|1|2|A|182
*
8BQX|1|2|U|203
8BQX|1|2|G|204
*
8BQX|1|2|C|263
8BQX|1|2|G|264
8BQX|1|2|A|265
8BQX|1|2|A|266
8BQX|1|2|U|267
*
8BQX|1|2|A|288
8BQX|1|2|U|289
8BQX|1|2|G|290
8BQX|1|2|G|291
8BQX|1|2|U|292
8BQX|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A