J5_8BR8_003
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGAC*GG*CCGAG
- Length
- 22 nucleotides
- Bulged bases
- 8BR8|1|Lt|A|461, 8BR8|1|Lt|G|502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BR8|1|Lt|C|423
8BR8|1|Lt|G|424
8BR8|1|Lt|A|425
8BR8|1|Lt|G|426
*
8BR8|1|Lt|C|446
8BR8|1|Lt|G|447
8BR8|1|Lt|G|448
8BR8|1|Lt|A|449
8BR8|1|Lt|G|450
*
8BR8|1|Lt|C|457
8BR8|1|Lt|G|458
8BR8|1|Lt|A|459
8BR8|1|Lt|G|460
8BR8|1|Lt|A|461
8BR8|1|Lt|C|462
*
8BR8|1|Lt|G|469
8BR8|1|Lt|G|470
*
8BR8|1|Lt|C|500
8BR8|1|Lt|C|501
8BR8|1|Lt|G|502
8BR8|1|Lt|A|503
8BR8|1|Lt|G|504
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LM
- 60S ribosomal protein L13
- Chain LR
- Ribosomal protein L18
- Chain Lb
- Ribosomal protein L27a
- Chain Lc
- 60S ribosomal protein L29
- Chain Lj
- Ribosomal protein L36-1
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