J5_8BR8_004
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACGCGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8BR8|1|Lt|G|1605, 8BR8|1|Lt|G|1610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BR8_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0976
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BR8|1|Lt|G|1538
8BR8|1|Lt|C|1539
8BR8|1|Lt|A|1540
8BR8|1|Lt|A|1541
8BR8|1|Lt|G|1542
8BR8|1|Lt|C|1543
8BR8|1|Lt|C|1544
8BR8|1|Lt|G|1545
8BR8|1|Lt|G|1546
*
8BR8|1|Lt|U|1570
8BR8|1|Lt|G|1571
*
8BR8|1|Lt|U|1598
8BR8|1|Lt|G|1599
*
8BR8|1|Lt|C|1603
8BR8|1|Lt|G|1604
8BR8|1|Lt|G|1605
8BR8|1|Lt|A|1606
8BR8|1|Lt|C|1607
8BR8|1|Lt|G|1608
8BR8|1|Lt|C|1609
8BR8|1|Lt|G|1610
8BR8|1|Lt|G|1611
*
8BR8|1|Lt|C|1819
8BR8|1|Lt|A|1820
8BR8|1|Lt|C|1821
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LB
- Ribosomal protein L3
- Chain LS
- Ribosomal protein L19
- Chain LW
- Ribosomal protein L23
- Chain LX
- Ribosomal protein L24
- Chain St
- Small subunit ribosomal RNA; SSU rRNA
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