J5_8BR8_005

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

8BR8|1|Lt|A|2240, 8BR8|1|Lt|U|2241, 8BR8|1|Lt|U|2296, 8BR8|1|Lt|U|2400, 8BR8|1|Lt|U|2401

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|Lt|A|1887
8BR8|1|Lt|G|1888
8BR8|1|Lt|A|1889
8BR8|1|Lt|A|1890
8BR8|1|Lt|G|1891
8BR8|1|Lt|A|1892
8BR8|1|Lt|C|1893
8BR8|1|Lt|C|1894
*
8BR8|1|Lt|G|2238
8BR8|1|Lt|G|2239
8BR8|1|Lt|A|2240
8BR8|1|Lt|U|2241
8BR8|1|Lt|A|2242
8BR8|1|Lt|A|2243
8BR8|1|Lt|C|2244
8BR8|1|Lt|U|2245
8BR8|1|Lt|G|2246
*
8BR8|1|Lt|C|2290
8BR8|1|Lt|U|2291
8BR8|1|Lt|U|2292
8BR8|1|Lt|C|2293
8BR8|1|Lt|G|2294
8BR8|1|Lt|A|2295
8BR8|1|Lt|U|2296
8BR8|1|Lt|G|2297
8BR8|1|Lt|U|2298
8BR8|1|Lt|C|2299
*
8BR8|1|Lt|G|2373
8BR8|1|Lt|G|2374
8BR8|1|Lt|U|2375
8BR8|1|Lt|U|2376
8BR8|1|Lt|U|2377
8BR8|1|Lt|A|2378
8BR8|1|Lt|G|2379
*
8BR8|1|Lt|U|2397
8BR8|1|Lt|A|2398
8BR8|1|Lt|G|2399
8BR8|1|Lt|U|2400
8BR8|1|Lt|U|2401
8BR8|1|Lt|U|2402

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain LB

Ribosomal protein L3

Chain LC

Ribosomal protein L4

Chain Lb

Ribosomal protein L27a