J5_8BR8_006
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UUGA*UUCG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8BR8|1|Lt|G|1906, 8BR8|1|Lt|A|2222, 8BR8|1|Lt|G|2223, 8BR8|1|Lt|A|2224, 8BR8|1|Lt|A|2225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BR8_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2594
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BR8|1|Lt|U|1904
8BR8|1|Lt|U|1905
8BR8|1|Lt|G|1906
8BR8|1|Lt|A|1907
*
8BR8|1|Lt|U|2035
8BR8|1|Lt|U|2036
8BR8|1|Lt|C|2037
8BR8|1|Lt|G|2038
*
8BR8|1|Lt|C|2051
8BR8|1|Lt|G|2052
*
8BR8|1|Lt|C|2074
8BR8|1|Lt|G|2075
*
8BR8|1|Lt|C|2221
8BR8|1|Lt|A|2222
8BR8|1|Lt|G|2223
8BR8|1|Lt|A|2224
8BR8|1|Lt|A|2225
8BR8|1|Lt|A|2226
8BR8|1|Lt|A|2227
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LA
- Ribosomal protein L2
- Chain LO
- Ribosomal protein L15
- Chain LR
- Ribosomal protein L18
- Chain LU
- Ribosomal protein L21
- Chain Lb
- Ribosomal protein L27a
- Chain Lc
- 60S ribosomal protein L29
- Chain Lp
- Ribosomal protein L44
- Chain Lu
- Transfer RNA; tRNA
Coloring options: