J5_8BR8_007

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUCU*AGCGC*GAGCGAG*CGCGCAG*CGAG

Length

27 nucleotides

Bulged bases

8BR8|1|St|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BR8|1|St|C|30
8BR8|1|St|U|31
8BR8|1|St|C|32
8BR8|1|St|U|33
*
8BR8|1|St|A|387
8BR8|1|St|G|388
8BR8|1|St|C|389
8BR8|1|St|G|390
8BR8|1|St|C|391
*
8BR8|1|St|G|394
8BR8|1|St|A|395
8BR8|1|St|G|396
8BR8|1|St|C|397
8BR8|1|St|G|398
8BR8|1|St|A|399
8BR8|1|St|G|400
*
8BR8|1|St|C|420
8BR8|1|St|G|421
8BR8|1|St|C|422
8BR8|1|St|G|423
8BR8|1|St|C|424
8BR8|1|St|A|425
8BR8|1|St|G|426
*
8BR8|1|St|C|472
8BR8|1|St|G|473
8BR8|1|St|A|474
8BR8|1|St|G|475

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23

Chain Sb

Ribosomal protein S24

Chain Sj

40S ribosomal protein S30