J5_8BRM_002

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGAGCC*GGGC*GUUG*CC*GCAGAUC

Length

23 nucleotides

Bulged bases

8BRM|1|Lt|U|1124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BRM_002 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.1065

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|G|406
8BRM|1|Lt|G|407
8BRM|1|Lt|A|408
8BRM|1|Lt|G|409
8BRM|1|Lt|C|410
8BRM|1|Lt|C|411
*
8BRM|1|Lt|G|516
8BRM|1|Lt|G|517
8BRM|1|Lt|G|518
8BRM|1|Lt|C|519
*
8BRM|1|Lt|G|658
8BRM|1|Lt|U|659
8BRM|1|Lt|U|660
8BRM|1|Lt|G|661
*
8BRM|1|Lt|C|1062
8BRM|1|Lt|C|1063
*
8BRM|1|Lt|G|1119
8BRM|1|Lt|C|1120
8BRM|1|Lt|A|1121
8BRM|1|Lt|G|1122
8BRM|1|Lt|A|1123
8BRM|1|Lt|U|1124
8BRM|1|Lt|C|1125

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LC

Ribosomal protein L4

Chain LD

5.8S rRNA

Chain LM

Ribosomal protein L13

Chain LO

Ribosomal protein L15

Chain Lb

Ribosomal protein L27a

Chain Lf

Ribosomal protein L32